rs27003797 SNP Detail

Summary

• ID
  rs27003797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:113135961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTGATTGA AGCCTTTGAT CACCAGTGCG TCAGAAGAAT
  GGACACACCC CGCCGAGGTT GGCCTCTGGG GTCTTGAGCA TTCACAGACT ACAATATCCA
  Y
  CCTTGGAGAG ACGGAACATG TAAACACAGA GGCAAGATAC TGATAGCCCA GTCAGTACCC
  AAATGCCAGG CTCTGGGGTA GAGTCTGTTC TCTGAGTCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37253416	NES08528353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27003797					SNP	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37253416	NES08528353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113135961 () rs orientation: forward

Symbol	Name	Function Class
D11Dcr27	DNA Segment, Chr 11, Derry C. Roopenian 27	1716 bp proximal
D11Mit168	DNA segment, Chr 11, Massachusetts Institute of Technology 168	1713 bp proximal
Slc39a11	solute carrier family 39 (metal ion transporter), member 11	within coordinates