rs27005207 SNP Detail

Summary

• ID
  rs27005207
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104219015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCTTCAGG GAGAATGCCA
  AAGCCAAGAC AGACCATGGA GCAGAAATTG TGTATAAGTC ACCCGTGGTG TCTGGGGACA
  CATCTCCACG GCACCTCAGC AATGTGTCTT CCACGGGCAG CATCGACATG GTGGACTCAC
  CACAGCTTGC CACACTAGCC GATGAAGTGT CTGCTTCCTT GGCCAAGCAG GGTTTGTGAT
  S
  AGGCTCCCAG GGCAGTCAAT AATCATGGAG AGAAGAGAGA GTGAGAGTGT GGAAAAAAAA
  AAAAAAAAAG AATGATCTGG CCCCTTGCCC TCTGCCCTCC CCGCTGCTCC TCATAGACAG
  GCTGACCTGC TTGTCACCTA ACCTGCTTTT GTGGCTCGGA TTTGGCTCGG GACTTCAAAA
  TCAGTGATGG GAAAAGTACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274646	NES08553206	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27005207					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274646	NES08553206	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104219015 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Tssr3697	transcription start site region 3697	1728 bp upstream
Tssr105389	transcription start site region 105389	387 bp upstream
Tssr105390	transcription start site region 105390	1578 bp upstream
Tssr105391	transcription start site region 105391	1768 bp upstream
Tssr111229	transcription start site region 111229	49 bp downstream