rs27005208 SNP Detail

Summary

• ID
  rs27005208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104218929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCCAC CACAGACTAG
  CTCTGGTGTA TAGAACCTTA TCATTAATCT CACTCTCTAC ATCTTGCAGA TTGAAACCCA
  CAAGCTGACC TTCAGGGAGA ATGCCAAAGC CAAGACAGAC CATGGAGCAG AAATTGTGTA
  TAAGTCACCC GTGGTGTCTG GGGACACATC TCCACGGCAC CTCAGCAATG TGTCTTCCAC
  R
  GGCAGCATCG ACATGGTGGA CTCACCACAG CTTGCCACAC TAGCCGATGA AGTGTCTGCT
  TCCTTGGCCA AGCAGGGTTT GTGATCAGGC TCCCAGGGCA GTCAATAATC ATGGAGAGAA
  GAGAGAGTGA GAGTGTGGAA AAAAAAAAAA AAAAAGAATG ATCTGGCCCC TTGCCCTCTG
  CCCTCCCCGC TGCTCCTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274647	NES08553205	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G		G	G	A	G
ss132753667	ENSMUSSNP3877703	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27005208					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274647	NES08553205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104218929 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Tssr3697	transcription start site region 3697	1814 bp upstream
Tssr105389	transcription start site region 105389	473 bp upstream
Tssr105390	transcription start site region 105390	1664 bp upstream
Tssr105391	transcription start site region 105391	1854 bp upstream
Tssr111229	transcription start site region 111229	135 bp downstream