rs27005225 SNP Detail

Summary

• ID
  rs27005225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104199035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTGGGA GGGAGTGCTG
  CTTCAGCCCA GGCTACCCCA GAGAGGCCCA GTCTCGAACT TACTTACTTC TCATGTGCGG
  TTTGCACTGG GGCATCTATG GACTACATCC TGTGTGTTCA GATTTACTTC GGGAACTAGG
  ACTGTTTGTG GGATGGGGAA CATGTGTCTG GAGACATCTG GGAGTGTTGG AGGTTTGGAC
  Y
  GTCTCTAACC TCAGTCCCAG TGGGTAAATA TCACTGATAG GCAGAGGGTT TTGCTGGGCC
  GAGTTTTTGT TTGTCAAGAC ACGGCGTCAC ATCAAGCAGT GGTGGTGCAC GCCTTTAATC
  CCAGCACTTG GATTAAAACA ATGGGGGGCT GGAGAGATGG CTCAGCGGTT AAGGGTTAAG
  AGCACTGACT GCTCTTCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274671	NES08553529	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27005225					SNP	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274671	NES08553529	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104199035 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	797 bp downstream
Rr457785	regulatory region 457785	1615 bp proximal
Tssr3696	transcription start site region 3696	1485 bp downstream
Tssr105381	transcription start site region 105381	1555 bp downstream
Tssr105382	transcription start site region 105382	1511 bp downstream
Tssr105383	transcription start site region 105383	1486 bp upstream
Tssr105384	transcription start site region 105384	1599 bp upstream