rs27005228 SNP Detail

Summary

• ID
  rs27005228
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104198165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTGTTAGG AACCTTCTAG
  TAAAGCTCAA GGGTCATAGC TGAGTGATGG CGTGCTACGG TCATTACTCC AGTCTCCTGT
  GAATAAAAGC CAGTTGGCAT TAAGAACCTG GCCAGGCTAC AGTGGGGCTG TTTCACGTCT
  AATAGAGATA CCAGGAATAG AAGCCCTGAG GACCTGCTCC CAGAAGGGTT TTTGGATGCC
  K
  TGTGACTCTG TTGCCTGGCC TGCATTGCTC CCTGGTAATA CCCAGGAGGC CTGTGGGCCC
  CTGTGTCTAG CCTGGCTCTT AGTGTCCCTG TTCTCTTGGC AGAGGCAGCC CGTATTGCCT
  GCTGCATGCT TCTGGTATTG TAAAGGGTGT TGCCTGAGAA TTGGCTGTGT TTTCCCTAAG
  CAGCTGTGGT TCTGGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37274674	NES08553526	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27005228					SNP	T	G	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274674	NES08553526	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104198165 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	within coordinates
Tssr3696	transcription start site region 3696	615 bp downstream
Tssr105381	transcription start site region 105381	685 bp downstream
Tssr105382	transcription start site region 105382	641 bp downstream