rs27005229 SNP Detail

Summary

• ID
  rs27005229
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104198041 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATGGCT CTGGGGAGGC
  AGCCCCAGCA TAAAGTGTTA TCAGGTCCCC TACCTCTTTG GAGGATCAGT AGTCTGGGCG
  GGAAACCGTG GGGGAATCTC CAACATCTCA ATGTCACGCA GCTGGGTTGT TAGGAACCTT
  CTAGTAAAGC TCAAGGGTCA TAGCTGAGTG ATGGCGTGCT ACGGTCATTA CTCCAGTCTC
  M
  TGTGAATAAA AGCCAGTTGG CATTAAGAAC CTGGCCAGGC TACAGTGGGG CTGTTTCACG
  TCTAATAGAG ATACCAGGAA TAGAAGCCCT GAGGACCTGC TCCCAGAAGG GTTTTTGGAT
  GCCTTGTGAC TCTGTTGCCT GGCCTGCATT GCTCCCTGGT AATACCCAGG AGGCCTGTGG
  GCCCCTGTGT CTAGCCTGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37274675	NES08553525	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27005229					SNP	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274675	NES08553525	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104198041 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	within coordinates
Tssr3696	transcription start site region 3696	491 bp downstream
Tssr105381	transcription start site region 105381	561 bp downstream
Tssr105382	transcription start site region 105382	517 bp downstream