rs27005232 SNP Detail

Summary

• ID
  rs27005232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:104195853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTCTGGC GGTCTCCACC
  TGCTTTACTA AGTGGGAAAC ACCTTTAGGC CAGCACTCTC CAAGTCGGAC CTACAACAAG
  GTCCAATTGC TAAGGAAAGA ACGTAGCCGC ACGTCTGCCT GTGCTTCAAC CTCCCTCTTA
  CAAGTCCTAC GCCATGTCAC TTTCAGTCAT GCCCATCCCA CATCAGCTGT GTAGCATGCG
  Y
  GTAGCTGATG GGTGCCCAAG AGGGCAGAGT TGCCGTCCTT TCTTACTGGA AGGGCGGTGG
  AGAGGGCTGC TTTGAGCTGT GACTCGCCTT CTTTGTGTTG AGATTTTGTT TATCCTTTTC
  TCCATTTGTT TCCATTCCCC GTGTGCTGAC TTTCATTTTG ATTTTATTTA TGTTTATGTT
  TAAGACATCC ACACCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37274678	NES08553548	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27005232					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37274678	NES08553548	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:104195853 () rs orientation: forward

Symbol	Name	Function Class
Mapt	microtubule-associated protein tau	within coordinates
Rr386615	regulatory region 386615	within coordinates
Rr457784	regulatory region 457784	1298 bp distal
Tssr3696	transcription start site region 3696	1690 bp upstream
Tssr105381	transcription start site region 105381	1613 bp upstream
Tssr105382	transcription start site region 105382	1660 bp upstream