rs27005339 SNP Detail

Summary

• ID
  rs27005339
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105055925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCGTGG AAGTGCAGGA
  CCGCAAAGTC CGGGTTGTCC GGGCATGCCT CCAGGAAGTA CTCGGGCGTG GCGCGCTTAC
  GGATGAGGTC CGGGTAGAAG ATGTTGAATT TGTAGCCCTG CACGATCTTG AGCGGAGGGT
  TGTCCGAGTC GTAGTGCGTC TGGTTGTATT TGTTCCACTC GAAGCCCGTG TGCACGCGGT
  K
  GAAGAAGCGC GGCTTGCAAG GCCGGTACTT GTCGGCCCAC AGGTAGGCGC CGCCGCCCAG
  GGGCATCTCC AGGCTGAACT GAACTGCGCC TCGTCCTGCC CCATGCCCTC CCTCGCGCAC
  CGGAAGAAGA TGTCCTCAGC GCTCTCGCTC GCATCACCCG GAGCCTGAAG CTGCTGGCGA
  GACAACAGCA GGCGCTGCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37273462	NES08550561	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27005339					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37273462	NES08550561	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105055925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3999	CpG island 3999	within coordinates
Gm11620	predicted gene 11620	within coordinates
Tssr105425	transcription start site region 105425	393 bp downstream