rs27006472 SNP Detail

Summary

• ID
  rs27006472
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:108901970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGCAGCC TTTTGACTCA
  CAACAGAGCA TCTGCGACCA TGATGTCTTT AAACTACAGT ATGCACCCCC AAATCTTTCA
  CTCAGAGAAT CTCTGCCCTT CCCAGACTCC ATCCCAGGCA TCCCATTGCC TAGATAAGAA
  TTGAGGGTCC ATTAGGAACT GGCTACTTGT AGTAGAAGGA AGATGCTGGT GACAGTGACA
  K
  CAAGCTTAGT AGCCAAGAAC CTTCACCATG TTTCCTCCAC AGCCGACAGG TGCCCCAGAG
  TTCTGGGCAC ATCATTTCAC CCACTCTATG TCCTTGCAGC TATCTGACAT GGTACATGGC
  ACATGGAACA ATGCAGGCAC TATGTTCACT CAAGGCTTCT GCTGCCAAAT CTCTCCCACT
  CCATTGTTAC GTTAGCTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37264391	NES08530391	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27006472					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37264391	NES08530391	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:108901970 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4049	CpG island 4049	498 bp proximal
Gm36876	predicted gene, 36876	within coordinates
Tssr105627	transcription start site region 105627	571 bp upstream
Tssr105628	transcription start site region 105628	671 bp upstream
Tssr105629	transcription start site region 105629	687 bp upstream
Tssr105630	transcription start site region 105630	725 bp upstream
Tssr105631	transcription start site region 105631	842 bp upstream
Tssr111515	transcription start site region 111515	561 bp downstream
Tssr111516	transcription start site region 111516	627 bp downstream
Tssr111517	transcription start site region 111517	696 bp downstream
Tssr111518	transcription start site region 111518	716 bp downstream
Tssr111519	transcription start site region 111519	729 bp downstream
Tssr111520	transcription start site region 111520	759 bp downstream
Tssr111521	transcription start site region 111521	844 bp downstream