rs27006880 SNP Detail

Summary

• ID
  rs27006880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:113618376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTAGGGTA AGGGAGGCTC
  GCTATGAGCT TGAGGCCGGC TTGGGCTAGA GTGAGACCGT ATCCCAAAAA GCCAAAAACA
  AACAAACAAA AAACCCACTT TCATTTCCCT GGAATTCCAA TCAAATACAG TCCCGTCTTG
  TTTTGTGTTT TTGCGAGGCC TGGCCCAGAG CCCAAGGAGA GGCCACTAAC TAGCCAAAGC
  R
  TAGCTCACAC CCCGGGGAAT AATGTATCAT TTAAGCATCG TATTCCAGAA CTTTTCCTAC
  ACAGCCCTCC TTCAGCCACT AACAGCTATG GAGGTGGGGG TTCCGGGACA AACACTGGTG
  GTGGCTGCCC CGCCACAGTC CAACCTGGGC AGGGTCTGTA CACCAGATTC AGGTGAGATA
  ACAGTCACTC AGCCACCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37251499	NES08530120	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27006880					SNP	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37251499	NES08530120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:113618376 () rs orientation: forward

Symbol	Name	Function Class
Cdc42ep4	CDC42 effector protein 4	within coordinates
Rr459435	regulatory region 459435	1459 bp distal
Rr459436	regulatory region 459436	within coordinates