rs27007812 SNP Detail

Summary

• ID
  rs27007812
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103026154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCTGGC TGCCGTGAAA
  CTCGATTTGT AGACCAGGCT GGCCTGTAAC TCAGAGACAT ACTTGCCTTT GCTTCCTGAG
  TGCTGGCATT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GACAGTGTTT AACTCAGAGA
  GGCTTTTAAC CCATTTAAGC CTAGTCTGGG TTTCTTATGG CGTTTGTCAA GTAAGGCTAC
  R
  AGAGAGGGTG AATGTCTCGT GCAGGTTACA GAGCAGAACT TATCTTTTAT AGTGATAGTG
  GTGGAGGGTC AGAGCTTCAA AATGGAGACA ATGAATAAGC AGAGGGACAG AGCTGGCTTG
  GTTTTAGGCC GGAGTCACTA GGGAACTAAG ACTGGGAACA GGAAAATGAC CGGAAACATA
  CAATAAGCTA TCCTTAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37278535	NES08550390	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27007812					SNP	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278535	NES08550390	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103026154 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	1985 bp distal
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Tssr105312	transcription start site region 105312	1996 bp downstream
Tssr105313	transcription start site region 105313	1969 bp downstream
Tssr105314	transcription start site region 105314	1952 bp downstream
Tssr105315	transcription start site region 105315	1283 bp downstream