rs27007813 SNP Detail

Summary

• ID
  rs27007813
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103024300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCTGTC CTCTTCGCCC
  CTCCACCTCC CCCCCCCCCC ATCTTAGGGC TTTAGCGGCT TGGCCAGAGC TGCTGCTACT
  GCAGCAAGAG ATAGGGCAGA GGCGTTGAGA CTCTCATGGA CAGGCGGTCG CACAGAAAGA
  CACACAGAGG TAGTGGTGTA CACTAAGCCC TTGACAGCAA ATAGGTCAGT CCCACCTTCG
  Y
  TAAATCTCCC TGCCAGGACT TTTCCCTCCT CCAAGAACTC CATTTTTACT CCCATTGAAT
  TTTTTTTCTT CTTCTTTCTG TCAGCTGCAT GTAGTTTGAA GACTTCTTCC CTTTAGCTCC
  CCGTTCCTTG AGACAGGAGA GAAGCCGTCC AGGCCCTGTA GACAAAAAGA CTTCAACCAT
  AGGCTCTGAC CAGGTCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37278536	NES08550433	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27007813					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278536	NES08550433	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103024300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	131 bp distal
Gm57409	predicted gene, 57409	573 bp upstream
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Rr403011	regulatory region 403011	346 bp downstream
Rr457520	regulatory region 457520	599 bp distal
Rr457521	regulatory region 457521	119 bp distal
Rr457522	regulatory region 457522	within coordinates
Tssr105311	transcription start site region 105311	294 bp downstream
Tssr105312	transcription start site region 105312	142 bp downstream
Tssr105313	transcription start site region 105313	115 bp downstream
Tssr105314	transcription start site region 105314	98 bp downstream
Tssr105315	transcription start site region 105315	557 bp upstream
Tssr111155	transcription start site region 111155	1657 bp upstream
Tssr111156	transcription start site region 111156	556 bp upstream