rs27007816 SNP Detail

Summary

• ID
  rs27007816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103023450 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCACGTCC CGGTGGAAGC ACAGCAGAGG GGAAGCCGTC
  TTACTGGCCT CTCCTCTGCT GGGATCCCGG GAAATACGCG GTAATTACCC CAAAAGGCCG
  Y
  TCTCAAAGGC GAGGCGGAGA GGCTGCCGGG ACGGTTTGAG GACTGGGCTC GGCCGGGGAG
  ACGCCAACCT TCACCCTTCC CAGCCCCCGA CCCAACTCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37278539	NES08550430	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27007816					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278539	NES08550430	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103023450 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3955	CpG island 3955	within coordinates
Gm57409	predicted gene, 57409	within coordinates
Hexim2	hexamethylene bis-acetamide inducible 2	within coordinates
Rr403011	regulatory region 403011	203 bp upstream
Rr457520	regulatory region 457520	within coordinates
Rr457521	regulatory region 457521	252 bp proximal
Rr457522	regulatory region 457522	732 bp proximal
Tssr105311	transcription start site region 105311	547 bp upstream
Tssr105312	transcription start site region 105312	679 bp upstream
Tssr105313	transcription start site region 105313	709 bp upstream
Tssr105314	transcription start site region 105314	739 bp upstream
Tssr105315	transcription start site region 105315	1407 bp upstream
Tssr111155	transcription start site region 111155	807 bp upstream
Tssr111156	transcription start site region 111156	229 bp downstream