rs27007817 SNP Detail

Summary

• ID
  rs27007817
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103023149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGAGAAA TCTTGAGGGC
  AAGAGAGCTC AGAAATTTCC AAGCGCTAAG CTCGAGCTTT CCACGTGCCC AGATCTAGTT
  GGTCCCAGGG GGAGTTGGTG GCTGTTATAG AAGTTAGAGG GTTGTTGCTT TTCGCAGCCC
  TGAGAAGTGG GATGGACACG GTGTATGGGG GTGGGGAGGC GGGTGCAATC CGGCCGGGCA
  M
  CCTCGGAGCC TCCAGCTCAC TAGCACTGCT CAGGGCATGC GGCCAGAGTT GCAACCTCGG
  CCCGTCCCTG CGAGCCAGGG TCTCCAACTG GCGTCGCGCC CACCTCGTCC TTCAGATGGG
  GGTCCGGCTA CGCCGGGCCT GGCCGCCATA CCCGGGATGA ATGGGGGTGA CGAGAGGCCT
  TGGGCAGACC TCGGCCTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37278541	NES08550426	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27007817					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278541	NES08550426	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103023149 () rs orientation: forward

Symbol	Name	Function Class
C130045F17Rik	RIKEN cDNA C130045F17 gene	1930 bp upstream
Cpgi3955	CpG island 3955	within coordinates
Gm57409	predicted gene, 57409	within coordinates
Hexim2	hexamethylene bis-acetamide inducible 2	106 bp upstream
Rr403011	regulatory region 403011	504 bp upstream
Rr457520	regulatory region 457520	within coordinates
Rr457521	regulatory region 457521	553 bp proximal
Rr457522	regulatory region 457522	1033 bp proximal
Tssr105311	transcription start site region 105311	848 bp upstream
Tssr105312	transcription start site region 105312	980 bp upstream
Tssr105313	transcription start site region 105313	1010 bp upstream
Tssr105314	transcription start site region 105314	1040 bp upstream
Tssr105315	transcription start site region 105315	1708 bp upstream
Tssr111155	transcription start site region 111155	506 bp upstream
Tssr111156	transcription start site region 111156	530 bp downstream