rs27007818 SNP Detail

Summary

• ID
  rs27007818
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103023094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCAAAAGC GGATGCTGAC
  GTTCGAGGTC AGGCCATTGG GAGAGTCGGG GCTCGATGGG AGAAATCTTG AGGGCAAGAG
  AGCTCAGAAA TTTCCAAGCG CTAAGCTCGA GCTTTCCACG TGCCCAGATC TAGTTGGTCC
  CAGGGGGAGT TGGTGGCTGT TATAGAAGTT AGAGGGTTGT TGCTTTTCGC AGCCCTGAGA
  R
  GTGGGATGGA CACGGTGTAT GGGGGTGGGG AGGCGGGTGC AATCCGGCCG GGCAACCTCG
  GAGCCTCCAG CTCACTAGCA CTGCTCAGGG CATGCGGCCA GAGTTGCAAC CTCGGCCCGT
  CCCTGCGAGC CAGGGTCTCC AACTGGCGTC GCGCCCACCT CGTCCTTCAG ATGGGGGTCC
  GGCTACGCCG GGCCTGGCCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37278542	NES08550425	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27007818					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278542	NES08550425	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103023094 () rs orientation: forward

Symbol	Name	Function Class
C130045F17Rik	RIKEN cDNA C130045F17 gene	1875 bp upstream
Cpgi3955	CpG island 3955	within coordinates
Gm57409	predicted gene, 57409	within coordinates
Hexim2	hexamethylene bis-acetamide inducible 2	161 bp upstream
Rr403011	regulatory region 403011	559 bp upstream
Tssr105311	transcription start site region 105311	903 bp upstream
Tssr105312	transcription start site region 105312	1035 bp upstream
Tssr105313	transcription start site region 105313	1065 bp upstream
Tssr105314	transcription start site region 105314	1095 bp upstream
Tssr105315	transcription start site region 105315	1763 bp upstream
Tssr111155	transcription start site region 111155	451 bp upstream
Tssr111156	transcription start site region 111156	585 bp downstream