rs27007819 SNP Detail

Summary

• ID
  rs27007819
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:103022209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGAAAA ATTAGTTATA
  GCTAGGAAGC TCTCACCCCA TTTAGGACTA TTCAAGTTTC ACTAGTAGCC CTGGCTGGCC
  TGAAACTCTC TATGGAGAGC TGGCTGGCCT CAAATTTAAG AGATCCACCA CATCCAGCTG
  GAAAGACTTT GTTTTTTTTA TTAATACAAG GGGCAGTCCT TCAACCCTGA AGAAACTTTC
  M
  CGGGTCCTAC TGTTAAAGCA AGGGCCTAGG AGTTAAGACC ATCTATAACT AGCAGTAAAA
  TTCATTACAA GGTACTCACA GGTATCAATG GCTAGTTAAC CACCTACTTC AGAGCCTTAC
  CTGGGCACAA TTTTAACTGA CAGCTCAACT ACAAAGCTAT CATTTGAAGG TGTAGTCTGG
  AAATCTTTAA GAAACAAGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37278543	NES08550424	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27007819					SNP	C	C	C	C	C	C	A	C	C	C	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37278543	NES08550424	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:103022209 () rs orientation: forward

Symbol	Name	Function Class
C130045F17Rik	RIKEN cDNA C130045F17 gene	990 bp upstream
Cpgi3955	CpG island 3955	768 bp proximal
Gm57409	predicted gene, 57409	within coordinates
Hexim2	hexamethylene bis-acetamide inducible 2	1046 bp upstream
Rr403011	regulatory region 403011	1444 bp upstream
Rr457520	regulatory region 457520	175 bp proximal
Rr457521	regulatory region 457521	1493 bp proximal
Rr457522	regulatory region 457522	1973 bp proximal
Tssr105311	transcription start site region 105311	1788 bp upstream
Tssr105312	transcription start site region 105312	1920 bp upstream
Tssr105313	transcription start site region 105313	1950 bp upstream
Tssr105314	transcription start site region 105314	1980 bp upstream
Tssr111155	transcription start site region 111155	429 bp downstream
Tssr111156	transcription start site region 111156	1470 bp downstream