rs27010738 SNP Detail

Summary

• ID
  rs27010738
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106147762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTAGAGTGC CTCGAAAATA
  CTTTGGCTTT ACCCTTTAGT ACTTTATGCC TTTTCTTTTT CTTTTCTTTT CTTTTCTTCT
  TTTTTTTTTT TAACACTTAC ACTTGTCTTC AGATGGAACT GGAAGAGGGG AAGGCAGGCA
  GTGGACTCCG TCAATATTAT CTGTCCAAGA TTGAAGAACT CCAGGTGAGT ACAGACAGCA
  R
  AGGGAGCTAG TGGAGGACGG GAGCTGGTAG GTGCAGATTT CTCTGTGTCC TTTTTCCACT
  GGGAGTGCAG CAAAGAGTTC TTTTCCAATG TTGTTCGTTT GCAGCTCTTT GCTTGTCTGT
  TTCTTATGTG TATATGTATA TATGCCTGCG TAAGCTTATG TGTATCACAT ATATACAGAT
  GTCTGTGCAA GTCAGAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271460	NES08546372	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010738					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271460	NES08546372	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106147762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	556 bp distal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	857 bp upstream
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	within coordinates
Rr403040	regulatory region 403040	676 bp downstream
Tssr105507	transcription start site region 105507	801 bp downstream
Tssr105508	transcription start site region 105508	764 bp downstream
Tssr105509	transcription start site region 105509	747 bp downstream
Tssr111306	transcription start site region 111306	1099 bp upstream
Tssr111307	transcription start site region 111307	833 bp upstream