rs27010739 SNP Detail

Summary

• ID
  rs27010739
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106146789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGTTAGA TAGCCCTTAA
  CTCCGCAGGT TTTCAACTCT TAGGAAGCAG CACATGTAGG CAGTAATCGT ACTTCCGCTT
  CTGCGCGCGT TTCCTACATT CCTGGCGTCA TGATTTCCGC CATTTTGAGT GTGGCCAAAA
  TTTTTTTGTC AGCAGGCCTT ACAAGTTAAA AGTAGAGGCT AGGAAGTAGA GTGCAATAAC
  W
  CGTATCCTAA ACGCTAGGAA GCATCAACCA GAAGTTCTAT ATCTCTTCAC AAAACTAGTG
  ACCTCCAGTA GAGCCTCTAC TAATACAGCC ACTGTGTTTG TATCGCCACA CACCCCGCCC
  ATTGACCCGG AACTGTTCTC GGTGGTGACC CAGGGCGCAT GCTTTCGCCT CCGCGCCTGC
  GCGATAGAGT GACTTGGATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271463	NES08546367	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010739					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271463	NES08546367	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106146789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	within coordinates
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	within coordinates
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	222 bp upstream
Rr403040	regulatory region 403040	within coordinates
Tssr105507	transcription start site region 105507	161 bp upstream
Tssr105508	transcription start site region 105508	177 bp upstream
Tssr105509	transcription start site region 105509	210 bp upstream
Tssr111306	transcription start site region 111306	126 bp upstream
Tssr111307	transcription start site region 111307	82 bp downstream