rs27010743 SNP Detail

Summary

• ID
  rs27010743
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106146557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTAGAAGA AGCGAAAAGA
  CGGGGATGTT GTTCCTCAGC GCGAACCCAC TCACCAGTCT CCTTGGCCAA GTGATAGAAC
  TTGTCCCGCC GGCTCTTGCC TACTTTGCCT TTCTTGCCCA TGGCGGGATG GGGGAGTATC
  ACTCACTCTG GGGAGAAAGA AAAAGGTGAG ATCGTCTTTC CGAGCACTGG ATCTCGCTTC
  R
  GTTCCTCAGG CGGTGGAGCA ATCACTTACC CAGACGTTAG ATAGCCCTTA ACTCCGCAGG
  TTTTCAACTC TTAGGAAGCA GCACATGTAG GCAGTAATCG TACTTCCGCT TCTGCGCGCG
  TTTCCTACAT TCCTGGCGTC ATGATTTCCG CCATTTTGAG TGTGGCCAAA ATTTTTTTGT
  CAGCAGGCCT TACAAGTTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271467	NES08546361	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010743					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271467	NES08546361	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106146557 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	within coordinates
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	within coordinates
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	454 bp upstream
Rr403040	regulatory region 403040	228 bp upstream
Tssr105507	transcription start site region 105507	393 bp upstream
Tssr105508	transcription start site region 105508	409 bp upstream
Tssr105509	transcription start site region 105509	442 bp upstream
Tssr111306	transcription start site region 111306	49 bp downstream
Tssr111307	transcription start site region 111307	314 bp downstream