rs27010748 SNP Detail

Summary

• ID
  rs27010748
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106145115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACAGTACTA TCCCTGCCAG
  GCACGGTGGC ACTCGACTGC AATCCCAGAG GCAGAGGGAG AGAGACTGCA AGATCAAGGC
  CAAACTAGGC TATGTACTCA GCTCCACATC AGTGTGGGCT ACACAGTTAG AAGCTATCCT
  AAAGTACACA GCAAGACTCT ATCTCAGGGA AAAACAAAAA CACTTGATTG TAAATAAAGA
  Y
  GGAAATGTAC ACAAGGATTG TCAGTCTTTT TGGCCACGTG CTTGAAACCA TGGTAAATTG
  GGAAGTGTTT CATTCACTCT TCAGAGGCAA TGACAGCCAG GCACTAGTGG CACACCCCTT
  TAATCCCAGC ACTTGGGAGG CAGAGGCAGG CAGATTTCTG AGTTCAAGGC CAGCCTGGTC
  TACAGAGTGA GTTCCAGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271472	NES08546405	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010748					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271472	NES08546405	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106145115 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4019	CpG island 4019	946 bp proximal
Ftsj3	FtsJ RNA 2'-O-methyltransferase 3	within coordinates
Psmc5	protease (prosome, macropain) 26S subunit, ATPase 5	1896 bp upstream
Rr403040	regulatory region 403040	1670 bp upstream
Tssr105507	transcription start site region 105507	1835 bp upstream
Tssr105508	transcription start site region 105508	1851 bp upstream
Tssr105509	transcription start site region 105509	1884 bp upstream
Tssr111306	transcription start site region 111306	1491 bp downstream
Tssr111307	transcription start site region 111307	1756 bp downstream