rs27010802 SNP Detail

Summary

• ID
  rs27010802
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106109509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCACGTTA TTTCTTTATG
  TATGTTTATC ATGCCCTCCT GTAGAGGTTA GAGGCCAACC TCTGGGAGTT GGTTTTCTCC
  TTCCACTATG TAGGTCCTCA GGATGGAATT CTGGTCAGGC GATTAATCTG TAGAACCATT
  TTACCAGTCC ATTTATGAAA CTTTCTAAAG AAGAAGGAGA GATGTGTGTT ATGCTTTATG
  Y
  TAAAGAGTAG TCTGTACCAG CAAAGGAGGC TTGGGAGAAG CTGCAATAGA GTAGTCAGGG
  AAAGCCCTTT CTGGTATCTA ACAGATATTT AGGCAAGCTA GAAAATGGTG AGAGCATCTA
  ACCACGGAGG TATCTGGAGA AAGGAATGTT CTGAGCAGGT GGACAGCAAT CATGAAGGCC
  TTGAAGGGGA CAAAGCTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271528	NES08547124	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010802					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271528	NES08547124	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106109509 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4018	CpG island 4018	1160 bp distal
Ddx42	DEAD box helicase 42	within coordinates
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	1799 bp downstream
Tssr105502	transcription start site region 105502	1715 bp downstream
Tssr105503	transcription start site region 105503	1707 bp downstream
Tssr105504	transcription start site region 105504	1675 bp downstream
Tssr105505	transcription start site region 105505	1625 bp downstream