rs27010803 SNP Detail

Summary

• ID
  rs27010803
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106107689 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGGACAT TCTTATGTAA
  ATGAAGTTTC CAATCAACAC CTTATTACCT TGAGTTTTTC GGGCGGTTCC CCATCGCCGC
  GGCTCTCTTC ATTGCAGACT CCCTCACTAC ACGACCCAGA CACAATCCTC ACCCAGGACC
  AGATTCCCGT CCGGGGTGTG TGACGTAGTT ATGTTGCGTT CCGGAATCGG AAGAGCGGCA
  W
  TAATTGGCGC CTTTCGGCAG CCGTAGCCCC AGCCCCACCC TTCGGCTCGC GCTCTACTTA
  GCGCGCATGT CAGACGCTCC CCCCACCCTA CCCCCAGTCA GCAACGGGCC GTGAGGCGGC
  GGCGAAGGGG GCGGAGGAAG AGCGCGGCTG GACGCGGTCC CGCACCGCGC GTACGCAGGG
  CCGCGGGGGT TCTTTCGCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271529	NES08547157	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27010803					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271529	NES08547157	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106107689 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	340 bp upstream
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	63 bp upstream
Gm74325	predicted gene, 74325	264 bp downstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	within coordinates
Rr403037	regulatory region 403037	297 bp downstream
Tssr105500	transcription start site region 105500	386 bp downstream
Tssr105501	transcription start site region 105501	331 bp downstream
Tssr105502	transcription start site region 105502	65 bp upstream
Tssr105503	transcription start site region 105503	108 bp upstream
Tssr105504	transcription start site region 105504	133 bp upstream
Tssr105505	transcription start site region 105505	188 bp upstream
Tssr111304	transcription start site region 111304	546 bp upstream
Tssr111305	transcription start site region 111305	500 bp upstream