rs27010805 SNP Detail

Summary

• ID
  rs27010805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106107231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGCCTTTG TCTGGTTTCT
  GTCTTCAGGT CGCAAAGATA ATCTGCGGGC CGCGATGTCA CTGAACAGCC CAGAACAGGT
  AGCTCAGTCA CGGCACCCTA CTCTTCACGT AGCTTCAGCC GTCCGTTACG TAGAATGCGT
  ACAGCTAGTT TGCGCCTGCG CGCGGGGTGG GGGCGGGGCG CGGCCTTCAG GACATCCGCG
  Y
  AAGGCGAGCT AGGGCTGCTG GGAAAATTAC GTAACCCCCA GCGTCCCCTG GGCTACAAGT
  GCTCTAACTA GCGGAGGCTG CGTTTCTCCC GTAGGGTTCC GTCCGTCGGG TAGACGTCAC
  TTTGATCGGA TGCTCCGGAA GCTAAAGGTG GCCATAGTCT ATGGGGCCAT GTGGACAGAG
  GCATGAAGGG AAATGTTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37271532	NES08547153	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss323838739	CHEV_11_106077719	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27010805					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271532	NES08547153	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106107231 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	within coordinates
Cpgi4018	CpG island 4018	within coordinates
Ddx42	DEAD box helicase 42	521 bp upstream
Gm74325	predicted gene, 74325	48 bp upstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	174 bp upstream
Rr403037	regulatory region 403037	within coordinates
Tssr105500	transcription start site region 105500	23 bp upstream
Tssr105501	transcription start site region 105501	113 bp upstream
Tssr105502	transcription start site region 105502	523 bp upstream
Tssr105503	transcription start site region 105503	566 bp upstream
Tssr105504	transcription start site region 105504	591 bp upstream
Tssr105505	transcription start site region 105505	646 bp upstream
Tssr111304	transcription start site region 111304	88 bp upstream
Tssr111305	transcription start site region 111305	42 bp upstream