rs27010810 SNP Detail

Summary

• ID
  rs27010810
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106106377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGTTTC TAATGGAATT
  CATACAGGCT CCCTCAAGGT TATTTATGTT AAAATTATCC AAGCCATTTG TGCACTGGCT
  TTCTGATAAG ACTCAGCTGG ACCTGTCAAC CCATTTCTCA GATGCACAGC TCTCTGCCAG
  GCCATCCAGC CTCTAGGACT TCTGAAGCAG AAAACACTAG ACTCCAAGCC AGGCACAACA
  W
  TAACACACCC ATCTTGATTA TCTTCCGCAA GCTCTCTCAG TAAAAAGGAG TATATGTAGC
  AATCATTGCT TGTCCTCCCA GGCCTCTGTG GCATCAGTCA AAATGATGAA ATTTCTAGAA
  ATGATGTAGA CATTACTGTC ACCTTACAAA GTAAAGTGTT GGTTACAAAT AACTTGCATG
  TTAGAAACCT TCGGGTAAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37271537	NES08547148	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27010810					SNP	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271537	NES08547148	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106106377 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	within coordinates
Cpgi4018	CpG island 4018	459 bp proximal
Ddx42	DEAD box helicase 42	1375 bp upstream
Gm74325	predicted gene, 74325	902 bp upstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	1028 bp upstream
Rr403037	regulatory region 403037	714 bp upstream
Tssr105500	transcription start site region 105500	877 bp upstream
Tssr105501	transcription start site region 105501	967 bp upstream
Tssr105502	transcription start site region 105502	1377 bp upstream
Tssr105503	transcription start site region 105503	1420 bp upstream
Tssr105504	transcription start site region 105504	1445 bp upstream
Tssr105505	transcription start site region 105505	1500 bp upstream
Tssr111304	transcription start site region 111304	759 bp downstream
Tssr111305	transcription start site region 111305	767 bp downstream