rs27010812 SNP Detail

Summary

• ID
  rs27010812
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106106318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCCTGTCA ATTTGACAGT
  CTGGCCATTT CAGTCTATAC CAGGAGTGTT CACAACACAG AAGTGTTTCT AATGGAATTC
  ATACAGGCTC CCTCAAGGTT ATTTATGTTA AAATTATCCA AGCCATTTGT GCACTGGCTT
  TCTGATAAGA CTCAGCTGGA CCTGTCAACC CATTTCTCAG ATGCACAGCT CTCTGCCAGG
  Y
  CATCCAGCCT CTAGGACTTC TGAAGCAGAA AACACTAGAC TCCAAGCCAG GCACAACATT
  AACACACCCA TCTTGATTAT CTTCCGCAAG CTCTCTCAGT AAAAAGGAGT ATATGTAGCA
  ATCATTGCTT GTCCTCCCAG GCCTCTGTGG CATCAGTCAA AATGATGAAA TTTCTAGAAA
  TGATGTAGAC ATTACTGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37271539	NES08547146	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27010812					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271539	NES08547146	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106106318 () rs orientation: forward

Symbol	Name	Function Class
Ccdc47	coiled-coil domain containing 47	within coordinates
Cpgi4018	CpG island 4018	518 bp proximal
Ddx42	DEAD box helicase 42	1434 bp upstream
Gm74325	predicted gene, 74325	961 bp upstream
Rr245973	regulatory region 245973	within coordinates
Rr369397	regulatory region 369397	1087 bp upstream
Rr403037	regulatory region 403037	773 bp upstream
Tssr105500	transcription start site region 105500	936 bp upstream
Tssr105501	transcription start site region 105501	1026 bp upstream
Tssr105502	transcription start site region 105502	1436 bp upstream
Tssr105503	transcription start site region 105503	1479 bp upstream
Tssr105504	transcription start site region 105504	1504 bp upstream
Tssr105505	transcription start site region 105505	1559 bp upstream
Tssr111304	transcription start site region 111304	818 bp downstream
Tssr111305	transcription start site region 111305	826 bp downstream