rs27011480 SNP Detail

Summary

• ID
  rs27011480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97308087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGAGTTT GTGCCTATTA
  TATTTTTATT TTATTTTACT TTTTGGTTTT TCAAGATAAG GCTTCTCTGT GCAGCCCTGG
  CTGTCCTGGA ACTCTCTCTG TAGACCAGGC CGGCCTCGAA CTCAGAGATG CATGTGCCTC
  TGCCTCCCGA GTGCTGGATT AAAGGCGTGC ACCACCACCG CCCGGCAATG TTAGTGCCTA
  Y
  TTTACAGATA AGGTCTGACC TAAAGGTATG GCGATATTGT TGGGCTGGAA CCTGAGTTCT
  GGTGGTCTTT AGGGCAGGAA ATGAAGTTGG GGGAAGGGAG CACTGGAGAG ACGGCTCAGC
  AGTTGAGAGC ACTGACTGCT CTTCCAAGAG GACCTGGGTT CTATTCCCAG CCCCCGCGTG
  GCAGCTCACA ACTGTCTGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37292601	NES08563212	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27011480					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292601	NES08563212	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97308087 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	within coordinates
Cpgi3698	CpG island 3698	979 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr402912	regulatory region 402912	1760 bp downstream
Rr455766	regulatory region 455766	1229 bp distal
Rr455767	regulatory region 455767	228 bp distal
Rr455768	regulatory region 455768	918 bp distal
Tssr104623	transcription start site region 104623	1723 bp downstream
Tssr104624	transcription start site region 104624	1685 bp downstream
Tssr104625	transcription start site region 104625	1664 bp downstream