rs27011481 SNP Detail

Summary

• ID
  rs27011481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97307684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCAGGAG TGGAGGTCAT
  TAAGCTGGAG TCCTCCGGAT TCTCCCCCCA CTCCCACCCC CACCAACGTG TACTTCATCC
  CTGTCCCCTT ACAGACTCCA CCCATACCCC CTGTAGGCTT CTGGTGGGAG GCCTTTGATC
  CCACGTGGTT CTCCCCTCTG CCAGGGCAAC AACCCCGTTT TCAAAATGGA CAGAGCTGAC
  R
  GCAGGAGATT TGAATCTCCA CTGCAAAACT AGTCATTTGG CCTGAAGACT TGGCCCAAAG
  GCCCCGGCCC TGGTGGCTCC CTCCAGTTGC CCACATGTGG TTGGATCCAC CACCAGATGG
  CTGGGAACTC AGAGATCCTG TGTTCCAGGC CCTACCTCAG TGGATGGCCT TCATGCAGGG
  CTAGATTAGA GGGTCTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37292602	NES08563248	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27011481					SNP	A	A	A	A	A	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292602	NES08563248	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97307684 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	within coordinates
Cpgi3698	CpG island 3698	576 bp distal
Gm57393	predicted gene, 57393	within coordinates
Rr402912	regulatory region 402912	1357 bp downstream
Rr455766	regulatory region 455766	826 bp distal
Rr455767	regulatory region 455767	within coordinates
Rr455768	regulatory region 455768	515 bp distal
Tssr104623	transcription start site region 104623	1320 bp downstream
Tssr104624	transcription start site region 104624	1282 bp downstream
Tssr104625	transcription start site region 104625	1261 bp downstream