rs27011482 SNP Detail

Summary

• ID
  rs27011482
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97306001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGCTACT ATTATGAATC
  GTAATGTAAA TATCTGATAT ACTACCCTGA TATATATCTG ATATGCTACC CCTGATGAAA
  GGCTCGTTCA ATTCCCAAAA AGAGTCACGA CCCATAGGTT GAAAACCAGT GCTCTAGAGT
  ATTCCCACCA AACTTTGTCC GTTCTTTCCC TGTCTGAAAT GAGATCAGGA TCGACCTCAC
  R
  GGCTTTCTGG ACCTCTGGGT CCGTTTCTGT TCCTTTCTGG CTGCCTTTCC CTGTGCTATT
  TACTGAGTTC GGTGCCCTCA TCCACTTTCG TGCTCACCAA TCAACTTCTA TCTGGGTAGG
  TCCCTTAGAG GCCCTCTCCA GAAGCTTCCC CTGAGACCTT ATCTCTGGTC AGGCTCGGTT
  CTGACCCATG GCTCCACGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37292603	NES08563247	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27011482					SNP	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292603	NES08563247	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97306001 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	358 bp upstream
Cpgi3698	CpG island 3698	324 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	1815 bp downstream
Rr402912	regulatory region 402912	26 bp upstream
Rr455766	regulatory region 455766	4 bp proximal
Rr455767	regulatory region 455767	858 bp proximal
Rr455768	regulatory region 455768	1147 bp proximal
Tssr104623	transcription start site region 104623	352 bp upstream
Tssr104624	transcription start site region 104624	379 bp upstream
Tssr104625	transcription start site region 104625	402 bp upstream