rs27011483 SNP Detail

Summary

• ID
  rs27011483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97305493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCATA GGGCTGTCTT
  AGTGGAGTGG ATCTTTGCAG GACCAGAGGT CTGAACCATA GCACTCACTA TGACGGGCAC
  CAAAAGTCTG CGGTGTCTGT CCGACCTCCC TTCTAAGCTT CACTCGGCTG CCACTGTGGG
  ACCCTGTCTA AGATTCTTCC TGGGAGGGGA TCTTTTCTAG ATGGGGGCCT ACTCCAAACC
  R
  TATCTGTTGT GCCTCAACTT CCATGACTTT CTAGAGCAGA GGTTCTCAGC CTTCCTAACT
  CGGCAATCTT TTCGTACAGT TCTTCATGTT GTGATGACCC CCAACAATAA AACTATTTCG
  TTTCTACTCC CCTCCCCACC TCCCGCTTTG AGACAGGGTT TCTCTGTGTA ACAGCCCGGA
  CTGTCTTGGA ACTCTGTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37292604	NES08563255	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27011483					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292604	NES08563255	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97305493 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	866 bp upstream
Cpgi3698	CpG island 3698	832 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	1307 bp downstream
Rr402912	regulatory region 402912	534 bp upstream
Rr455765	regulatory region 455765	1927 bp distal
Rr455766	regulatory region 455766	512 bp proximal
Rr455767	regulatory region 455767	1366 bp proximal
Rr455768	regulatory region 455768	1655 bp proximal
Tssr104623	transcription start site region 104623	860 bp upstream
Tssr104624	transcription start site region 104624	887 bp upstream
Tssr104625	transcription start site region 104625	910 bp upstream