rs27011485 SNP Detail

Summary

• ID
  rs27011485
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:97305409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGTGGC TGGTTCAGGC
  CTGGAATGTC TCTTTAGGAC TAGCTCCCAC TGAAGCAGGA AGGCCGGCTT ACCGGTTGGG
  AGTGTTTCTT CATAGGGCTG TCTTAGTGGA GTGGATCTTT GCAGGACCAG AGGTCTGAAC
  CATAGCACTC ACTATGACGG GCACCAAAAG TCTGCGGTGT CTGTCCGACC TCCCTTCTAA
  S
  CTTCACTCGG CTGCCACTGT GGGACCCTGT CTAAGATTCT TCCTGGGAGG GGATCTTTTC
  TAGATGGGGG CCTACTCCAA ACCGTATCTG TTGTGCCTCA ACTTCCATGA CTTTCTAGAG
  CAGAGGTTCT CAGCCTTCCT AACTCGGCAA TCTTTTCGTA CAGTTCTTCA TGTTGTGATG
  ACCCCCAACA ATAAAACTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37292606	NES08563253	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27011485					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292606	NES08563253	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97305409 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	Intron
Cpgi3698	CpG island 3698	916 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	1223 bp downstream
Rr402912	regulatory region 402912	618 bp upstream
Rr455765	regulatory region 455765	1843 bp distal
Rr455766	regulatory region 455766	596 bp proximal
Rr455767	regulatory region 455767	1450 bp proximal
Rr455768	regulatory region 455768	1739 bp proximal
Tssr104623	transcription start site region 104623	944 bp upstream
Tssr104624	transcription start site region 104624	971 bp upstream
Tssr104625	transcription start site region 104625	994 bp upstream