rs27011486 SNP Detail

Summary

• ID
  rs27011486
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97305273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCAGCAT GGGCTGGAGA
  AAGAGGAAGA ATGAGAGTTA GACAGCAAAA AGAACTTCCC AGCTTGATGA AGGATTGTGT
  TGGGCTATGT GAGCCAGGGG GAGCAGGATG GGGTTCTTTC TGTTGGAGGA CTGTGAAGTG
  AGTGGCTGGT TCAGGCCTGG AATGTCTCTT TAGGACTAGC TCCCACTGAA GCAGGAAGGC
  Y
  GGCTTACCGG TTGGGAGTGT TTCTTCATAG GGCTGTCTTA GTGGAGTGGA TCTTTGCAGG
  ACCAGAGGTC TGAACCATAG CACTCACTAT GACGGGCACC AAAAGTCTGC GGTGTCTGTC
  CGACCTCCCT TCTAAGCTTC ACTCGGCTGC CACTGTGGGA CCCTGTCTAA GATTCTTCCT
  GGGAGGGGAT CTTTTCTAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37292607	NES08563252	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27011486					SNP	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292607	NES08563252	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97305273 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	1086 bp upstream
Cpgi3698	CpG island 3698	1052 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	1087 bp downstream
Rr402912	regulatory region 402912	754 bp upstream
Rr455765	regulatory region 455765	1707 bp distal
Rr455766	regulatory region 455766	732 bp proximal
Rr455767	regulatory region 455767	1586 bp proximal
Rr455768	regulatory region 455768	1875 bp proximal
Tssr104623	transcription start site region 104623	1080 bp upstream
Tssr104624	transcription start site region 104624	1107 bp upstream
Tssr104625	transcription start site region 104625	1130 bp upstream