rs27011487 SNP Detail

Summary

• ID
  rs27011487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97305115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTCCTTTA CTTTGCCTTT
  GTTTTTTGCT TTGTTTGTTT GTTTGTTTTT CCCCAGACAG GGTTTCTCTG TGTAGCCCTA
  GCTGTCCTGG AACTCACTCT GTAGACCAGA CCCCCCACCC CCACAAAAAA AAAATCCTGT
  AAAAAAAGGT TTAGGAAGAA GTCAGCATGG GCTGGAGAAA GAGGAAGAAT GAGAGTTAGA
  Y
  AGCAAAAAGA ACTTCCCAGC TTGATGAAGG ATTGTGTTGG GCTATGTGAG CCAGGGGGAG
  CAGGATGGGG TTCTTTCTGT TGGAGGACTG TGAAGTGAGT GGCTGGTTCA GGCCTGGAAT
  GTCTCTTTAG GACTAGCTCC CACTGAAGCA GGAAGGCCGG CTTACCGGTT GGGAGTGTTT
  CTTCATAGGG CTGTCTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37292608	NES08563251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27011487					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37292608	NES08563251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97305115 () rs orientation: forward

Symbol	Name	Function Class
Arhgap23	Rho GTPase activating protein 23	1244 bp upstream
Cpgi3698	CpG island 3698	1210 bp proximal
Gm57393	predicted gene, 57393	within coordinates
Rr386534	regulatory region 386534	929 bp downstream
Rr402912	regulatory region 402912	912 bp upstream
Rr455765	regulatory region 455765	1549 bp distal
Rr455766	regulatory region 455766	890 bp proximal
Rr455767	regulatory region 455767	1744 bp proximal
Tssr104623	transcription start site region 104623	1238 bp upstream
Tssr104624	transcription start site region 104624	1265 bp upstream
Tssr104625	transcription start site region 104625	1288 bp upstream