rs27014416 SNP Detail

Summary

• ID
  rs27014416
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121088391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCAAGC CCATGCATCT
  GCTGGATGCC CACCTGCACC CTACTCTCCT TCCTCCAGCC TCTCACCTAT ACAGGTTCAC
  AAAGTGTTTC CCAACAGACA AGGCTCCAGA GTGCAGGTCC AGGATAGATG CCTGAAAAAG
  ATGAATGTGC ATAAAACATG GTCACTTTAG TAGCCAAAGT TGAACCCTAG TTGCCACAAT
  Y
  CATTGTATAA ATGCTCTACC TCTGACTTTT GTTTTGTTTT GTTTTGTTTT TTGTTTTTTC
  AAGACAGGGT TTCTCTGTGT AGCCCTGGCT GTCCTGGAAC TCACTCTGTA GACCAGGCTG
  GCCTCGAACT CAGAAATCCA CCTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCGTGCT
  TCACTACCAC TCTGCTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236844	NES08512705	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27014416					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236844	NES08512705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121088391 () rs orientation: forward

Symbol	Name	Function Class
Ogfod3	2-oxoglutarate and iron-dependent oxygenase domain containing 3	within coordinates
Rr239421	regulatory region 239421	410 bp proximal
Rr239422	regulatory region 239422	1610 bp proximal
Tssr112449	transcription start site region 112449	1210 bp upstream