rs27014431 SNP Detail

Summary

• ID
  rs27014431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:121085658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTTCTGT GGAAGAGGTC
  AAGGACAGGA GTGGACCCTC GTGGCTATCC TGCTGCTGGT AACAAGGTCT TAGGGAGCAG
  ATAAAGAAAA AACTAAAAAC AAAAAACTGT GAGAGTGGAC ATCCTGTGGG GACACAGAGA
  CCTGGGCTGG GGAAGCAATG AAAGGGACCC TCTGCTTACA CAGTCCAATC AGAAAGGTTG
  Y
  ACATGAATTT GGGAACAAAT ATGACAAAGG ATACCACCAG GCTAATGCTG CTCCAGCAGC
  CACCACACCT TCTGTTCCAG CCCTCAACAC CGTGACACAA ATCTATCTCC TCAATTGTAT
  CACCTAGCTG AGAGTGCACC CAAGGACCTC AGGAAGAAGA GCTCCAAAAT AGCGAACGGA
  AATGGAGAGC AGGTGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37236859	NES08512784	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27014431					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37236859	NES08512784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:121085658 () rs orientation: forward

Symbol	Name	Function Class
Ogfod3	2-oxoglutarate and iron-dependent oxygenase domain containing 3	within coordinates
Rr239420	regulatory region 239420	858 bp distal
Tssr112449	transcription start site region 112449	1520 bp downstream