rs27015729 SNP Detail

Summary

• ID
  rs27015729
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781515 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGGAAT GGGGATCTCT
  CTGTGCACAA CACCAAATGT GGCAGCTGAG TCCTTCATGT AAGGTGGATG ACCAAAGAAA
  GGGCCGTGCT TGGGGGGAAG GGACCGGGAT CTCCCTCTGC ACACAGCTGT CAGAACAAGA
  GACAAGTCAA CACACGGTGG GGGCTGGTGG CTGTCCAGGA CGGGTGCCCA GAGGATTTTT
  K
  GATGGTTTAG AATAGAAAAC AGGAGGTCAG GGCAGGTGGT ACCAGTATGA GTGGACAGTG
  GTTGTGTTGA GAGGCCCTGA CAGGCACGTG CTGGTGTGGA TGTGTGTGAA AAAATTTAAT
  CTGTCTATCT TTCTTTCCTT CTCTTCCTTC CTTCCATCTT TCCCTCTTTC TTTCTTTTCT
  TCTTGGGTCC CCCCCCCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248959	NES08519445	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27015729					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248959	NES08519445	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781515 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	318 bp distal
Rr459730	regulatory region 459730	343 bp distal
Tssr105810	transcription start site region 105810	486 bp downstream
Tssr105811	transcription start site region 105811	463 bp downstream
Tssr105812	transcription start site region 105812	319 bp downstream
Tssr105813	transcription start site region 105813	303 bp downstream
Tssr105814	transcription start site region 105814	323 bp upstream
Tssr111666	transcription start site region 111666	463 bp upstream