rs27015730 SNP Detail

Summary

• ID
  rs27015730
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGCC TCAGCTGTGT GGCTGCCCAC
  R
  CTGTTGCTGC TGCTGCTGCT TTTTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37248960	NES08519444	PERLEGEN	MM_PANEL2	f	SNP	A		G	A	A	G		G		A	A	A	A	G
ss38830534	mCV25148310	ABI	CRAMUS_MOUSE	f	SNP		A	G				A		A
ss132864690	ENSMUSSNP4534477	ENSEMBL	ENSEMBL_Sanger	f	SNP			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27015730					SNP	A	A	G	A	A	G	A	G	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248960	NES08519444	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781226 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	29 bp distal
Rr459730	regulatory region 459730	54 bp distal
Tssr105810	transcription start site region 105810	197 bp downstream
Tssr105811	transcription start site region 105811	174 bp downstream
Tssr105812	transcription start site region 105812	30 bp downstream
Tssr105813	transcription start site region 105813	14 bp downstream
Tssr105814	transcription start site region 105814	612 bp upstream
Tssr111666	transcription start site region 111666	174 bp upstream