rs27015731 SNP Detail

Summary

• ID
  rs27015731
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGAGCCT CACGGGGGGT
  TCATCAGCTC GCCTCGGCTC CTTCCGATTC TTTTAGTTTC TCCCGTAGCT CCAGGAACAG
  AACTGAGGAA AGTCGGAAGC AAAACAGCTA GACACAAAGA AAAGCAGAAG TGGGCGTCTC
  AGAGACTGGC CGTCCCCCAG CGGGACTGAA CCGTGGAGCG TCCAGCCGTG GCCTGCCTGC
  M
  GGTGACCCGT GTGTGGGAGA AATGACCCAA CTGGCCTCAG CTGTGTGGCT GCCCACACTG
  TTGCTGCTGC TGCTGCTTTT TTGGCTTCCA GGTGAGGTAG TGTCTGCCCG GGAGGGCGGG
  GGGCTTCGGG GAGATGCAGT GTGAGGCACT GGAATGGGGA TCTCTCTGTG CACAACACCA
  AATGTGGCAG CTGAGTCCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248961	NES08519443	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27015731					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248961	NES08519443	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781169 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	within coordinates
Rr459730	regulatory region 459730	within coordinates
Tssr105810	transcription start site region 105810	140 bp downstream
Tssr105811	transcription start site region 105811	117 bp downstream
Tssr105812	transcription start site region 105812	within coordinates
Tssr105813	transcription start site region 105813	34 bp upstream
Tssr105814	transcription start site region 105814	669 bp upstream
Tssr111666	transcription start site region 111666	117 bp upstream