rs27015732 SNP Detail

Summary

• ID
  rs27015732
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114781063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GAACAGAACT GAGGAAAGTC
  R
  GAAGCAAAAC AGCTAGACAC AAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248962	NES08519442	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27015732					SNP	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248962	NES08519442	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114781063 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	within coordinates
Rr459730	regulatory region 459730	within coordinates
Tssr105810	transcription start site region 105810	34 bp downstream
Tssr105811	transcription start site region 105811	11 bp downstream
Tssr105812	transcription start site region 105812	35 bp upstream
Tssr105813	transcription start site region 105813	140 bp upstream
Tssr105814	transcription start site region 105814	775 bp upstream
Tssr111666	transcription start site region 111666	11 bp upstream