rs27015733 SNP Detail

Summary

• ID
  rs27015733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114780558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTTGTAG CAAGAGGAGG
  AAAGCGTGAG ATGCTGAGGA GGATCTGGAA GGGAGGGCGC TCTCGGGACC TCATCATTGG
  CATAGGGCTG CCTGCGGCTT TAATAACTAC TATTATTATA TGATTAATAT AGTATAATAG
  CTAGCTATTG GGTGACCTGT TTTACAATAA GGTCAGAGTT TCCTGGGCTT TCGTGCCATT
  Y
  TGTACGAGCT GGAAGGGTTC ACAGGACCCC TGTGTACATG TTTGGTGTCT CCGTGGACCA
  GAGAAAGAGG GAGATCTGCA AGTTGTCTGG GTCCTTGCTC AAGTTCAATG GGGCTACACA
  AGAAAGAAGG TCGCAGCCTG GAGAGCCCCT GGTCAAATGG AAGACACATT TTCCAACACC
  AGAAACCCTT CAGGAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37248963	NES08519441	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C
ss132864686	ENSMUSSNP5147619	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27015733					SNP	T	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248963	NES08519441	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114780558 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	431 bp proximal
Rr459730	regulatory region 459730	368 bp proximal
Tssr105810	transcription start site region 105810	452 bp upstream
Tssr105811	transcription start site region 105811	483 bp upstream
Tssr105812	transcription start site region 105812	540 bp upstream
Tssr105813	transcription start site region 105813	645 bp upstream
Tssr105814	transcription start site region 105814	1280 bp upstream
Tssr111666	transcription start site region 111666	492 bp downstream