rs27015735 SNP Detail

Summary

• ID
  rs27015735
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:114780157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGT TGACATATGA TGCTATTACT
  R
  TCAAAGAGTG GTGTGTTTTC TTGTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	WSB/EiJ
ss37248965	NES08519439	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	G	A	A
ss132864662	ENSMUSSNP3765308	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	WSB/EiJ
rs27015735					SNP	A	G	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37248965	NES08519439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:114780157 () rs orientation: forward

Symbol	Name	Function Class
Cd300a	CD300A molecule	within coordinates
Cpgi4106	CpG island 4106	832 bp proximal
Rr459730	regulatory region 459730	769 bp proximal
Tssr105810	transcription start site region 105810	853 bp upstream
Tssr105811	transcription start site region 105811	884 bp upstream
Tssr105812	transcription start site region 105812	941 bp upstream
Tssr105813	transcription start site region 105813	1046 bp upstream
Tssr105814	transcription start site region 105814	1681 bp upstream
Tssr111666	transcription start site region 111666	893 bp downstream