rs27016054 SNP Detail

Summary

• ID
  rs27016054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115534396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCACAGC TCCCTCTCAC
  ATGCACATCA CCGCAACGGG GAGGAGCAGG TGGCACCCGG GAGCCTCCTA GCCACCAGTT
  CAGGTGGTTT GCTCGGCAGA ATCCTCTTTT GTTCAAGCCT CAACCCTTAC CGCGTCATAG
  CCAGCACCGT GTGGTTACCA ACTTTGTCTC ACCCAAAAGA CCACTGTCAC GGCTGTGTCA
  Y
  GTAGCTGCCT CACCGACTTC CTCAGAGATT AGCCTTTCCA CACCCTCAGC TCGGAAGGGA
  AGAGGAGCTT TCCAGCCCAG CTCTGGGTTC TTCTGAGTTC TTGTCTAAAC CATTTTCCAC
  ATAATGAGCT ACATCACTCG TCCTAGGTTC ACAGGGTCTG GAGATGCCGG CCAGAGTTAA
  CATACTCTAA GCCTTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
ss37247984	NES08525788	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	PWD/PhJ
rs27016054					SNP	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247984	NES08525788	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115534396 () rs orientation: forward

Symbol	Name	Function Class
Gm74409	predicted gene, 74409	1847 bp downstream
Grb2	growth factor receptor bound protein 2	475 bp downstream
Rr459977	regulatory region 459977	1511 bp distal
Rr459978	regulatory region 459978	790 bp distal
Rr459979	regulatory region 459979	within coordinates
Tssr111788	transcription start site region 111788	1490 bp downstream
Tssr111789	transcription start site region 111789	1645 bp downstream