rs27016055 SNP Detail

Summary

• ID
  rs27016055
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115534285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTCTCAGC ACTGGGGAAA
  AAATGACACC CCCCCCCCCA ATCAGGAAGG GGTTAAACTG ACACAAAGGG AGTTCAAAGT
  CAGCCCAAGC TCTCTGCTCA GCTGGCCCAG ACAAGCACAG CTCCCTCTCA CATGCACATC
  ACCGCAACGG GGAGGAGCAG GTGGCACCCG GGAGCCTCCT AGCCACCAGT TCAGGTGGTT
  Y
  GCTCGGCAGA ATCCTCTTTT GTTCAAGCCT CAACCCTTAC CGCGTCATAG CCAGCACCGT
  GTGGTTACCA ACTTTGTCTC ACCCAAAAGA CCACTGTCAC GGCTGTGTCA TGTAGCTGCC
  TCACCGACTT CCTCAGAGAT TAGCCTTTCC ACACCCTCAG CTCGGAAGGG AAGAGGAGCT
  TTCCAGCCCA GCTCTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
ss37247985	NES08525787	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	FVB/NJ	MOLF/EiJ	PWD/PhJ
rs27016055					SNP	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37247985	NES08525787	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115534285 () rs orientation: forward

Symbol	Name	Function Class
Gm74409	predicted gene, 74409	1736 bp downstream
Grb2	growth factor receptor bound protein 2	586 bp downstream
Rr459977	regulatory region 459977	1400 bp distal
Rr459978	regulatory region 459978	679 bp distal
Rr459979	regulatory region 459979	within coordinates
Tssr111788	transcription start site region 111788	1601 bp downstream
Tssr111789	transcription start site region 111789	1756 bp downstream