rs27024975 SNP Detail

Summary

• ID
  rs27024975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105925928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTCTTG GGTCAGTAGC
  AGAGAGACTA TGGCACTTAC CAGAGTGTGA GCAGGCCTTC TGGGCACGTC AGTATTTGCT
  TTCTGCTCTG GTGATGTGTT CCGGTTAGAA AAACATGTGT GCTCCCATAT GTAAATGACA
  TTTCAATAAA AAGTTAAACT CAACACACTA GAAAAAGGAG AACACGGTTT CAACCCACAC
  Y
  GCCTCGCTTG AGAGACCTGT TAAAACATCG TTGCTTGTCA GATAATTCTA ATCTGTCCTC
  CTCAGCCCAT TTTTCCTTCC TTTTGCAATT TCTATTTGAT GCCCCAGAGT CTGTTAGTGA
  GTTTATGAGC ACACATTCGC AAGTGTTTAT ACAAGCTAAA ACGTTAAAGT TAACTTTTCT
  GTTGGGCGTG GTGGCGCATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271905	NES08538514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024975					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271905	NES08538514	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105925928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4013	CpG island 4013	1464 bp proximal
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	1290 bp distal
Dcaf7	DDB1 and CUL4 associated factor 7	1770 bp upstream
Gm72314	predicted gene, 72314	509 bp downstream
Gm74406	predicted gene, 74406	1640 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	553 bp downstream
Rr403032	regulatory region 403032	1508 bp upstream
Rr458051	regulatory region 458051	1651 bp distal
Rr458052	regulatory region 458052	1150 bp distal
Rr458053	regulatory region 458053	1564 bp distal
Rr458054	regulatory region 458054	1094 bp proximal
Rr458055	regulatory region 458055	1580 bp proximal
Tssr105477	transcription start site region 105477	1500 bp downstream
Tssr105478	transcription start site region 105478	1755 bp upstream
Tssr105479	transcription start site region 105479	1765 bp upstream
Tssr105480	transcription start site region 105480	1826 bp upstream
Tssr105481	transcription start site region 105481	1858 bp upstream