rs27024976 SNP Detail

Summary

• ID
  rs27024976
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105925912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTATCCT CATATGAAAG
  GTCTTGGGTC AGTAGCAGAG AGACTATGGC ACTTACCAGA GTGTGAGCAG GCCTTCTGGG
  CACGTCAGTA TTTGCTTTCT GCTCTGGTGA TGTGTTCCGG TTAGAAAAAC ATGTGTGCTC
  CCATATGTAA ATGACATTTC AATAAAAAGT TAAACTCAAC ACACTAGAAA AAGGAGAACA
  Y
  GGTTTCAACC CACACTGCCT CGCTTGAGAG ACCTGTTAAA ACATCGTTGC TTGTCAGATA
  ATTCTAATCT GTCCTCCTCA GCCCATTTTT CCTTCCTTTT GCAATTTCTA TTTGATGCCC
  CAGAGTCTGT TAGTGAGTTT ATGAGCACAC ATTCGCAAGT GTTTATACAA GCTAAAACGT
  TAAAGTTAAC TTTTCTGTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271906	NES08538513	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024976					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271906	NES08538513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105925912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4013	CpG island 4013	1480 bp proximal
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	1274 bp distal
Dcaf7	DDB1 and CUL4 associated factor 7	1786 bp upstream
Gm72314	predicted gene, 72314	525 bp downstream
Gm74406	predicted gene, 74406	1624 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	537 bp downstream
Rr403032	regulatory region 403032	1524 bp upstream
Rr458051	regulatory region 458051	1635 bp distal
Rr458052	regulatory region 458052	1134 bp distal
Rr458053	regulatory region 458053	1548 bp distal
Rr458054	regulatory region 458054	1110 bp proximal
Rr458055	regulatory region 458055	1596 bp proximal
Tssr105477	transcription start site region 105477	1484 bp downstream
Tssr105478	transcription start site region 105478	1771 bp upstream
Tssr105479	transcription start site region 105479	1781 bp upstream
Tssr105480	transcription start site region 105480	1842 bp upstream
Tssr105481	transcription start site region 105481	1874 bp upstream