rs27024977 SNP Detail

Summary

• ID
  rs27024977
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105925829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACGGTGTTT GTCCAGCCCT
  CCACCATCCT CTCCTGCACA TGGTTGTCCT TCTAACCCGT AGAATAGCCT TAGGAAGTTG
  GTTTTACTAT CCTCATATGA AAGGTCTTGG GTCAGTAGCA GAGAGACTAT GGCACTTACC
  AGAGTGTGAG CAGGCCTTCT GGGCACGTCA GTATTTGCTT TCTGCTCTGG TGATGTGTTC
  Y
  GGTTAGAAAA ACATGTGTGC TCCCATATGT AAATGACATT TCAATAAAAA GTTAAACTCA
  ACACACTAGA AAAAGGAGAA CACGGTTTCA ACCCACACTG CCTCGCTTGA GAGACCTGTT
  AAAACATCGT TGCTTGTCAG ATAATTCTAA TCTGTCCTCC TCAGCCCATT TTTCCTTCCT
  TTTGCAATTT CTATTTGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271907	NES08538512	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024977					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271907	NES08538512	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105925829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4013	CpG island 4013	1563 bp proximal
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	1191 bp distal
Dcaf7	DDB1 and CUL4 associated factor 7	1869 bp upstream
Gm72314	predicted gene, 72314	608 bp downstream
Gm74406	predicted gene, 74406	1541 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	454 bp downstream
Rr403032	regulatory region 403032	1607 bp upstream
Rr458051	regulatory region 458051	1552 bp distal
Rr458052	regulatory region 458052	1051 bp distal
Rr458053	regulatory region 458053	1465 bp distal
Rr458054	regulatory region 458054	1193 bp proximal
Rr458055	regulatory region 458055	1679 bp proximal
Tssr105477	transcription start site region 105477	1401 bp downstream
Tssr105478	transcription start site region 105478	1854 bp upstream
Tssr105479	transcription start site region 105479	1864 bp upstream
Tssr105480	transcription start site region 105480	1925 bp upstream
Tssr105481	transcription start site region 105481	1957 bp upstream