rs27024978 SNP Detail

Summary

• ID
  rs27024978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105925522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAAAAGAA AGAGCTGCAG
  CCCTCAGCCC CTCAGCCCCC GAGAGTCCCA TAACGATATC TGGGACATGC AGTACCACAT
  AACTAATAAA GCCTTGAACA TTTCATGTTG GGCTAGGTGT GTAACCCACC CGAACATCCT
  CAGGTCCGTG CCTATGCTGG GACCTTCTCC AAACCCTTCC CGCACCCAAC CTGTTGGAGA
  Y
  CTGAAGGTGT CTCAGCTAGG AGCAGGGGCT CCACAGCCTG AAGCTGTCTC CAGCTGAAGG
  GAAACAGACT CAGCCTCCTA AGTGTCCACA GAGAATCATG GCCAGAGACG GTGTTTGTCC
  AGCCCTCCAC CATCCTCTCC TGCACATGGT TGTCCTTCTA ACCCGTAGAA TAGCCTTAGG
  AAGTTGGTTT TACTATCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271908	NES08538511	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024978					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271908	NES08538511	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105925522 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4013	CpG island 4013	1870 bp proximal
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	884 bp distal
Gm72314	predicted gene, 72314	915 bp downstream
Gm74406	predicted gene, 74406	1234 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	147 bp downstream
Rr403032	regulatory region 403032	1914 bp upstream
Rr458051	regulatory region 458051	1245 bp distal
Rr458052	regulatory region 458052	744 bp distal
Rr458053	regulatory region 458053	1158 bp distal
Rr458054	regulatory region 458054	1500 bp proximal
Rr458055	regulatory region 458055	1986 bp proximal
Tssr105477	transcription start site region 105477	1094 bp downstream