rs27024980 SNP Detail

Summary

• ID
  rs27024980
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105924920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAGCAGC CCAAGGGGCT
  CCTGTCACCT CTGGCCTCAC CTCTGTGTCC CCTGGAAGTA CAGGGACTGG GTGGTCCCCA
  CTTTTCCTCC CTCCCTGAAC ACCTCAGCTC CGTTCCCAAG CAGCTGGAAT TCCAGAGACA
  CGGTTCAGAT CCTGGATTCA CAAGGAGTTA GGCCCTTTAG ACCCCGGGAT AAAAGCTACC
  R
  TGAGGGAATT TAAATACAGC GAGGTGAGAG TTAAGCCCCC TTCCATGGAG GGCCAGACAG
  CTCTCCCATA AAACTCTGAA AACCATTTTC TCTGAAAAAC TGCAGACTGC TGAACCAGGT
  GACCAGGATG GCCTGAGCAG AGAGGCCTGG GACTTGGCCC AGCCTCCCTG GGAGTCCCTA
  TAGTCAGCAA GCCAGGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271910	NES08538509	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024980					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271910	NES08538509	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105924920 () rs orientation: forward

Symbol	Name	Function Class
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	282 bp distal
Gm72314	predicted gene, 72314	1517 bp downstream
Gm74406	predicted gene, 74406	632 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	within coordinates
Rr458050	regulatory region 458050	1684 bp distal
Rr458051	regulatory region 458051	643 bp distal
Rr458052	regulatory region 458052	142 bp distal
Rr458053	regulatory region 458053	556 bp distal
Tssr105477	transcription start site region 105477	492 bp downstream