rs27024981 SNP Detail

Summary

• ID
  rs27024981
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105924904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCCGTCC TCAGAACAAG
  AGCAGCCCAA GGGGCTCCTG TCACCTCTGG CCTCACCTCT GTGTCCCCTG GAAGTACAGG
  GACTGGGTGG TCCCCACTTT TCCTCCCTCC CTGAACACCT CAGCTCCGTT CCCAAGCAGC
  TGGAATTCCA GAGACACGGT TCAGATCCTG GATTCACAAG GAGTTAGGCC CTTTAGACCC
  Y
  GGGATAAAAG CTACCATGAG GGAATTTAAA TACAGCGAGG TGAGAGTTAA GCCCCCTTCC
  ATGGAGGGCC AGACAGCTCT CCCATAAAAC TCTGAAAACC ATTTTCTCTG AAAAACTGCA
  GACTGCTGAA CCAGGTGACC AGGATGGCCT GAGCAGAGAG GCCTGGGACT TGGCCCAGCC
  TCCCTGGGAG TCCCTATAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271911	NES08538508	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	T	T	C	C
ss38846416	mCV24648237	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss132765885	ENSMUSSNP3242299	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024981					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271911	NES08538508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105924904 () rs orientation: forward

Symbol	Name	Function Class
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	266 bp distal
Gm72314	predicted gene, 72314	1533 bp downstream
Gm74406	predicted gene, 74406	616 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	within coordinates
Tssr105477	transcription start site region 105477	476 bp downstream