rs27024983 SNP Detail

Summary

• ID
  rs27024983
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:105924848 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGAATT TCTCCCCCAG
  GATACCTCAC GTGGCCGCGG CAATGGACAA ATCTCTGGTG CCGTCCTCAG AACAAGAGCA
  GCCCAAGGGG CTCCTGTCAC CTCTGGCCTC ACCTCTGTGT CCCCTGGAAG TACAGGGACT
  GGGTGGTCCC CACTTTTCCT CCCTCCCTGA ACACCTCAGC TCCGTTCCCA AGCAGCTGGA
  R
  TTCCAGAGAC ACGGTTCAGA TCCTGGATTC ACAAGGAGTT AGGCCCTTTA GACCCCGGGA
  TAAAAGCTAC CATGAGGGAA TTTAAATACA GCGAGGTGAG AGTTAAGCCC CCTTCCATGG
  AGGGCCAGAC AGCTCTCCCA TAAAACTCTG AAAACCATTT TCTCTGAAAA ACTGCAGACT
  GCTGAACCAG GTGACCAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37271913	NES08538506	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27024983					SNP	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37271913	NES08538506	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:105924848 () rs orientation: forward

Symbol	Name	Function Class
D11Mit201	DNA segment, Chr 11, Massachusetts Institute of Technology 201	210 bp distal
Gm72314	predicted gene, 72314	1589 bp downstream
Gm74406	predicted gene, 74406	560 bp upstream
Kcnh6	potassium voltage-gated channel, subfamily H (eag-related), member 6	within coordinates
Rr458050	regulatory region 458050	1612 bp distal
Rr458051	regulatory region 458051	571 bp distal
Rr458052	regulatory region 458052	70 bp distal
Rr458053	regulatory region 458053	484 bp distal
Tssr105477	transcription start site region 105477	420 bp downstream