rs27025208 SNP Detail

Summary

• ID
  rs27025208
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102517614 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTCTGATA TTTTGAAGGG ACCCTTTGGA CACTGGAGAC
  GTTTTGCACT ACAAAGTCCC AAAGCAGGAA GGGGAGACAA GCCTCTGCAG CTGTGGCCGT
  K
  GTCAAAGTTT TAGGGCTCAG TGAGGAAGAG AGCTCTCTCC ATGGCTGCCC AGGGCCCCTC
  ACTAGCCTTC TCTCTCACGT GCTTCAGCCC CCCTCCTCCT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37279833	NES08552897	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27025208					SNP	G	G	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37279833	NES08552897	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102517614 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3931	CpG island 3931	1270 bp distal
Rr457378	regulatory region 457378	1889 bp distal